Class: BioontologyAccordionSearchSelect

BioontologyAccordionSearchSelect()

Manages interactions between the BioPortal API and UI components. It connects the SearchSelect model, which specifies the ontology for querying, with the Accordion model that displays the search results. Changes in the selected ontology trigger a new search, updating the Accordion with formatted results. This model also tracks selected ontology classes for use across the application, primarily in the BioontologyBrowser view.

Constructor

new BioontologyAccordionSearchSelect()

Since:
  • 2.31.0
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Extends

  • Backbone.Model

Methods

connect()

Connects the three models together. When the bioontology results change, the accordion display model is updated to reflect the new results. When the selected ontology model changes in the searchSelect, the bioontology model is updated to reflect the new ontology.
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defaults()

Default model attributes
Properties:
Name Type Description
bioontology Bioontology The Bioontology model
accordion Accordion The Accordion model
searchSelect SearchSelect The SearchSelect model
selectedClass BioontologyClass The selected ontology class
accordionRoot string The root-level ontology or subtree when the Bioontology model is first fetched (can change when searching subtrees).
defaultSubtree string The default subtree to display when if no subtree is specified in the ontology options.
ontologyOptions Array An array of objects specifying the ontologies to choose from in the SearchSel
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fetchChildren(itemModel)

Fetches the children of an ontology class from the BioPortal API.
Parameters:
Name Type Description
itemModel Backbone.Model The model of the ontology class to fetch children for.
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initialize()

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setAccordionRoot(subTreeopt)

Sets the accordionRoot attribute to the root ontology or subtree when the Bioontology model is first fetched.
Parameters:
Name Type Attributes Description
subTree string <optional>
 The root ontology or subtree. If not provided, current subTree of the Bioontology model is used or the default subtree.
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setSelectedClass(itemModel)

Selects a class in the accordion and sets the selectedClass attribute in this connector to the selected class.
Parameters:
Name Type Description
itemModel Backbone.Model The model of the selected class.
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setupAccordion()

Sets up the Accordion model with the first ontology and fetches the ontology classes.
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setupBioontology(firstOntology)

Sets up the Bioontology model with the first ontology and fetches the ontology classes.
Parameters:
Name Type Description
firstOntology object The first ontology object in the ontologyOptions array.
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setupSearchSelect(options, selected)

Sets up the SearchSelect model with the ontology options and the first ontology.
Parameters:
Name Type Description
options Array.<object> An array of ontology options objects to populate a search select model.
selected string The value of the first ontology to select.
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switchOntology(newOntology)

Switches the ontology in the bioontology model to the selected ontology and fetches the new ontology classes.
Parameters:
Name Type Description
newOntology BioontolgyClass The selected ontology model, with ontology and subTree attributes.
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syncAccordion()

Syncs the accordion display model with the bioontology results model. This method is called when the bioontology results model changes.
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